SNP Profiles of BE 10 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
1._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
2._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
3._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
4._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
5._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
6._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
7._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
8._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
9._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
10._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
11._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
12._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
13._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
14._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
15._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
16._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
17._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
18._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
19._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
20._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
21._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
22._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	_	CC	TT	AA	AA	CC	GG
23._BE_10	TT	AA	GG	CC	TT	AA	CC	_	CC	TT	AA	AA	CC	GG
24._BE_10	TT	AA	GG	CC	_	_	CC	TT	CC	TT	AA	AA	CC	GG
25._GC-08-90-2-13	AA	AA	CC	GG	AA	AA	GG	AA	_	_	AA	AA	GG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
1._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
2._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
3._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
4._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
5._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
6._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
7._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
8._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
9._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
10._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
11._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
12._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
13._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
14._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
15._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
16._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
17._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
18._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
19._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
20._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
21._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
22._GC-08-090-2-13	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
23._BE_10	TT	AA	GG	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC	AA
24._BE_10	TT	AA	_	CC	GG	GG	AA	TT	AA	CC	TT	TT	_	AA
25._GC-08-90-2-13	AA	AA	GG	GG	CC	CC	_	AA	AA	CC	AA	_	CC	_

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
1._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
2._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
3._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
4._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
5._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
6._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
7._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
8._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
9._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
10._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
11._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
12._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
13._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
14._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
15._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
16._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
17._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
18._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
19._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
20._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
21._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
22._GC-08-090-2-13	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
23._BE_10	GG	AA	CC	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
24._BE_10	GG	AA	_	AA	CC	AA	TT	CC	TT	GG	X_X	X_X	X_X	X_X
25._GC-08-90-2-13	GG	AA	GG	AA	GG	AA	AA	CC	TT	GG	X_X	X_X	X_X	X_X

Input profile: BE_10

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 3 > FP

Dapeng Zhang, 2016

1._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

3._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

4._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

5._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

6._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

7._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

11._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

12._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 6

Dapeng Zhang, 2016

14._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 7

Dapeng Zhang, 2016

15._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 8

Dapeng Zhang, 2016

16._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 9

Dapeng Zhang, 2016

17._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 11

Dapeng Zhang, 2016

18._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 13

Dapeng Zhang, 2016

19._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 14

Dapeng Zhang, 2016

20._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 1 > FP

Dapeng Zhang, 2016

21._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 4 > FP

Dapeng Zhang, 2016

22._BE_10 GC-08-090-2-13

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

23._BE_10

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 2 > FP

Dapeng Zhang, 2016

24._BE_10

97 %
33 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/467 T1

Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

51.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership - Sample

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25